Question: Finding partially methylated domains starting from Illumina 450K IDAT files
gravatar for Pin.Bioinf
2.6 years ago by
Pin.Bioinf270 wrote:


I have IDAT files from Illumina 450K, and I would like to find the PMDs (partially methylated domains) to further associate it to cpg density and tetranucleotide motifs.

I know methpipe can do it (for .fastq files) is there a way to do it with minfi package or another?

Thank you

R illumina450 metylation • 573 views
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by Pin.Bioinf270
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