Single cell RNA-seq : cell cycle plot and stemness plot

Question

[just3.just5]

Hi

Is there any R package to produce plot a and b of the below Figure?

https://www.nature.com/articles/nature20123/figures/3

Thanks

[Devon Ryan]

You could do that with ggplot2 or even base R. Or do you mean a package to compute the metric that they're plotting? I assume that's something they just implemented themselves.

[igor]

You can compute that metric with Seurat's CellCycleScoring() function.

See example here: https://satijalab.org/seurat/cell_cycle_vignette.html

[Devon Ryan]

That's a handy function!