I've pull and image secessfully and now trying to run samtools sort, however, docker is not finding the bam file. Any suggestions?
Here is the code:
docker run -v /home/yey/mdl3/results:/data --rm biocontainers/samtools sort \ -T /tmp/HD753_IonXpress_007.sorted \ -o /home/yey/mdl3/results/HD753_IonXpress_007.sorted.bam /home/yley/mdl3/results/HD753_IonXpress_007.bam
I get an error message "sort: cannot read: /home/yey/mdl3/results/HD753_IonXpress_007.bam: No such file or directory"