Bacterial mobile elements database

Question

[hed.robin]

Hello!

I've been looking for a database of known bacterial mobile elements excluding (pro)phages: plasmids, transposons and IS's. And I couldn't find any. ISfinder's database is only available on web.

I want to detect known bacterial transposons and IS's in metagenomic samples. Does anyone know if there's a simple way of doing that? I'm not sure it can be done by looking at repeats as I need to find lots of TE's automatically.