Question

Robinson Foulds Distance to compare rooted trees?

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7.5 years ago

iotremba • 0

Hey, is it possible to use the Robinson Foulds Distance the same way to compare rooted trees as it is to do so for unrooted trees? I read its possible to compare rooted and unrooted trees using R-F distance. Is that true? Cheers, Imogen

alignment rna-seq sequence sequencing • 1.7k views

ADD COMMENT • link updated 7.5 years ago by Joe 22k • written 7.5 years ago by iotremba • 0

score 0 · Answer 1 · 2018-05-31

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Entering edit mode

7.5 years ago

Joe 22k

Yes, look at the compare function of the ETE toolkit.

It has modes for rooted and unrooted comparisons.

Im not sure why this question is tagged with RNAseq?

ADD COMMENT • link 7.5 years ago by Joe 22k