I have a bunch of phylogenetic trees of tissue lineages. I have something on the order of 2000 lineages. For each lineage I have a 100-iteration bootstrap value calculated at every split/node. What I am looking for is a way to get a sense of the overall tree resolution, especially when compared with one another. The number of 'taxa' in each tree can be wildly different between trees. I am basically trying to see the presence of certain 'taxa' improve or hinder the overall ability to resolve each lineage tree.
I was thinking an average bootstrap value might give me some idea and then could compare them based on average bootstrap score.
Anybody have any guidance or tips?