Question: Does a no-normal pipeline exist for MuSiC?
gravatar for MMa
16 days ago by
MMa240 wrote:


We have a large set of tumor-only WES data that we want to run music smg. However, it's unclear from the documentations on whether:

  1. Matched tumor-normal bam files are required for music smg per se,
  2. Running music bmr calc-bmr is necessary before running music smg, and
  3. I can use the output from music bmr calc-wig-covg instead of music bmr calc-covg as the input of music bmr calc-bmr.

I would like previous users to give us more insight on this. Thanks!

music • 76 views
ADD COMMENTlink written 16 days ago by MMa240

hi. This has been answered at is needed info (BAM and MAF) files for normal tissues in MUSIC?

ADD REPLYlink written 13 days ago by Cyriac Kandoth5.0k
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