Question: Does a no-normal pipeline exist for MuSiC?
0
gravatar for MMa
2.2 years ago by
MMa290
MMa290 wrote:

Hi,

We have a large set of tumor-only WES data that we want to run music smg. However, it's unclear from the documentations on whether:

  1. Matched tumor-normal bam files are required for music smg per se,
  2. Running music bmr calc-bmr is necessary before running music smg, and
  3. I can use the output from music bmr calc-wig-covg instead of music bmr calc-covg as the input of music bmr calc-bmr.

I would like previous users to give us more insight on this. Thanks!

music • 666 views
ADD COMMENTlink written 2.2 years ago by MMa290
1

hi. This has been answered at is needed info (BAM and MAF) files for normal tissues in MUSIC?

ADD REPLYlink written 2.2 years ago by Cyriac Kandoth5.5k
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