Question: How to get a list of SNPs in LD with another list of SNPs
0
gravatar for kakukeshi
8 months ago by
kakukeshi50
kakukeshi50 wrote:

Hi there,

I have a list of 100 SNPs from one dataset and I would like to map them into another dataset (different array). When I do it directly by the SNP id only 10 are in both datasets, so I was thinking to also include the ones that are in the present in the second dataset and in LD (>0.9) with my subset of 100 SNPs.

Do you know what is the simplest way to do this? I especially interested if there is an R package used for this?

snp • 315 views
ADD COMMENTlink written 8 months ago by kakukeshi50

Can you please post some sample input and expected output....??

ADD REPLYlink written 8 months ago by Nitin Narwade380
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 769 users visited in the last hour