Question: Problem with getGEO (GEOquery)
gravatar for luciano.anselmino
12 months ago by
luciano.anselmino0 wrote:

Good morning everyone, I'm having problems with the getGEO function, every time I try I get this message (below). I already updated my version of R and Bioconductor, I tested on other computers and it works but not on mine. Also try to execute the code by deactivating the firewall, without answer. Someone help me?

GSE72970<- getGEO("GSE72970", GSEMatrix = TRUE) Found 1 file(s) GSE72970_series_matrix.txt.gz testing the URL '' Error in download.file(sprintf("", : not possible open the URL '' In addition: Warning message: In download.file(sprintf("", : InternetOpenUrl failed: 'An error occurred in the secure channel support'

sessionInfo() R version 3.5.1 Patched (2018-07-02 r74950) Platform: i386-w64-mingw32/i386 (32-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1

Matrix products: default

locale: [1] LC_COLLATE=Spanish_Argentina.1252 LC_CTYPE=Spanish_Argentina.1252
[3] LC_MONETARY=Spanish_Argentina.1252 LC_NUMERIC=C
[5] LC_TIME=Spanish_Argentina.1252

attached base packages: [1] parallel stats graphics grDevices utils datasets methods base

other attached packages: [1] GEOquery_2.48.0 Biobase_2.40.0 BiocGenerics_0.26.0

loaded via a namespace (and not attached): [1] Rcpp_0.12.17 tidyr_0.8.1 dplyr_0.7.6 assertthat_0.2.0 R6_2.2.2
[6] magrittr_1.5 pillar_1.2.3 rlang_0.2.1 curl_3.2 bindrcpp_0.2.2
[11] limma_3.36.2 xml2_1.2.0 readr_1.1.1 glue_1.2.0 purrr_0.2.5
[16] hms_0.4.2 compiler_3.5.1 pkgconfig_2.0.1 bindr_0.1.1 tidyselect_0.2.4 [21] tibble_1.4.2

geoquery R getgeo • 465 views
ADD COMMENTlink written 12 months ago by luciano.anselmino0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1120 users visited in the last hour