Question: Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
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gravatar for andromeda
12 months ago by
andromeda0
andromeda0 wrote:

Does there exist a BED file of CTCF ChIP-seq peaks that are conserved across different tissues in mice? ENCODE provides peaks for individual tissues, but I was wondering if anyone had already found common sites.

chip-seq peaks genome • 438 views
ADD COMMENTlink modified 12 months ago by kspata50 • written 12 months ago by andromeda0

You can do it by using bedtools or homer. Download all of the bed files for CTCF ChIP-Seq peaks of different tissues in mice from ENCODE and run the command as described on the bedtools/homer web page.

ADD REPLYlink modified 12 months ago • written 12 months ago by Nitin Narwade400
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gravatar for kspata
12 months ago by
kspata50
Chicago
kspata50 wrote:

You can take a look at this link:

http://insulatordb.uthsc.edu/

ADD COMMENTlink written 12 months ago by kspata50
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