Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
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2.8 years ago
andromeda • 0

Does there exist a BED file of CTCF ChIP-seq peaks that are conserved across different tissues in mice? ENCODE provides peaks for individual tissues, but I was wondering if anyone had already found common sites.

ChIP-Seq genome peaks • 833 views
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You can do it by using bedtools or homer. Download all of the bed files for CTCF ChIP-Seq peaks of different tissues in mice from ENCODE and run the command as described on the bedtools/homer web page.

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2.7 years ago
kspata ▴ 70

You can take a look at this link:

http://insulatordb.uthsc.edu/

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