differentially methylated bed file from encode
0
0
Entering edit mode
5.8 years ago
ccagg ▴ 60

I am looking to compile all the tissues profiled in the ENCODE WGBS and RRBS experiments into one matrix, and find all the differentially methylated regions, which has turned out to be a monumental amount of data. I'm looking for something similar to the roadmap fractional methylation calls found here

I realize that I can't be the first person to want to use DMRs from this dataset- I have seen many papers on it. However, I can't seem to find this processed data anywhere. I can only find individual bed files. Does anyone know where I can find a matrix like this? I would be very grateful for hours of saved time!

encode methylation WGBS • 1.1k views
ADD COMMENT

Login before adding your answer.

Traffic: 1463 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6