Question: differentially methylated bed file from encode
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gravatar for christacaggiano
8 days ago by
UCSF
christacaggiano20 wrote:

I am looking to compile all the tissues profiled in the ENCODE WGBS and RRBS experiments into one matrix, and find all the differentially methylated regions, which has turned out to be a monumental amount of data. I'm looking for something similar to the roadmap fractional methylation calls found here

I realize that I can't be the first person to want to use DMRs from this dataset- I have seen many papers on it. However, I can't seem to find this processed data anywhere. I can only find individual bed files. Does anyone know where I can find a matrix like this? I would be very grateful for hours of saved time!

wgbs methylation encode • 73 views
ADD COMMENTlink written 8 days ago by christacaggiano20
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