Normalisation of read mapping counts to account for contig length
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3.3 years ago
valerie ▴ 10

Hello biostars!

I'm trying to produce an OTU table from viral WMS libraries. The objective is to count the reads mapping on clustered contigs and use the normalized counts as abundance value of each cluster. Doing so I will have to normalize according to contig length and I was wondering if there was any tools that could help with this part.

metagenome normalisation read mapping OTU • 919 views
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