Question: Determine the derived allele
0
gravatar for Jautis
10 months ago by
Jautis270
United States
Jautis270 wrote:

Hi, I'm working in a non-model primate and we have an assembled genome comprised of various scaffolds. We sequenced a population of individuals and would like to determine which is the derived vs ancestral allele.

Conceptually, this is simply using an outgroup (in this case, the best choice is the rhesus macaque) to determine the likely ancestral allele. However, it's not clear how to transfer calls from the macaque genome over to our assembly to determine the ancestral allele. Any suggestions about an efficient way to do this?

Thanks in advance!

alignment • 392 views
ADD COMMENTlink written 10 months ago by Jautis270
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 825 users visited in the last hour