Question: How to Parse a Merged VCF File into Gene-by-Gene data Across Samples?
gravatar for nighralf
7 months ago by
nighralf0 wrote:

I have a 6 sample merged VCF file and I am trying to run a gene-by-gene association tool on the data. To do this I am looking for suggestions on how I might separate the VCF into gene by gene data? I would struggle to write my own python script to run this so would preferably like tool recommendations if possible!!

vcf genotype parse exome genome • 281 views
ADD COMMENTlink written 7 months ago by nighralf0

What does gene by gene mean in this context? Can you provide an example of the output you want?

ADD REPLYlink written 7 months ago by jared.andrews071.9k
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