How to separe eRNA by orientation from with GRO-SEQ data

Question

[ZheFrench]

eRNAs are bi-directionally transcribed. I was wondering how to separe them from a bam to make distinct bigwig using orientation and strand appartenance.

[GouthamAtla]

Do you want to identify bidirectional transcripts ? or want to create a bigwig that displays transcripts in a strand specific manner ?

[ZheFrench]

Identify bidirectional transcripts, separe them into two different bam, to make 2 bigwigs to display distinctly depending both orientation.

Answer 1

[pr.jan]

I'm also interested on this answer. Did you find a way of doing it, ZheFrench?