How to extract haplotype from Dosage VCF from Michigan Imputation Server? (Eagle phased, minimac imputed)
0
0
Entering edit mode
5.6 years ago
jpablo • 0

I processed a 23andme raw file in the Michigan Imputation Server, it was phased with Eagle and imputed with Minimac I got dose.vcf files for each chromosome and info files.

I need to separate haplotypes for each chromosome, and produce a raw data file from it. Or at least produce a raw data file of the phased genotype (23andme, Ancestry or FTDNA format, build37) Any idea about the tools / process needed to achieve this?

Thank you in advance! Juan Pablo

SNP • 1.4k views
ADD COMMENT

Login before adding your answer.

Traffic: 1787 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6