Question: How to extract haplotype from Dosage VCF from Michigan Imputation Server? (Eagle phased, minimac imputed)
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2.4 years ago by
jpablo0 wrote:

I processed a 23andme raw file in the Michigan Imputation Server, it was phased with Eagle and imputed with Minimac I got dose.vcf files for each chromosome and info files.

I need to separate haplotypes for each chromosome, and produce a raw data file from it. Or at least produce a raw data file of the phased genotype (23andme, Ancestry or FTDNA format, build37) Any idea about the tools / process needed to achieve this?

Thank you in advance! Juan Pablo

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