Error in running KisSplice
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0
Entering edit mode
3.0 years ago
963786304 • 0

Dear All, I'm running KisSplice-2.4.0-p1, but in the first process " Building de Bruijn graph" I get the following error:

kissplice -s 1 -k 41 --experimental -r ./sample_example/reads1.fa -r ./sample_example/reads2.fa
[08:58:55 29/09/2018] --> Building de Bruijn graph...
Graph will be written in results/graph_reads1_reads2_k75.[edges/nodes]
Exception in thread Thread-1:   
Traceback (most recent call last):
File "/home/ysq/wpq/python2.7/lib/python2.7/threading.py", line 801, in __bootstrap_inner
self.run()
..
File "/home/ysq/wpq/python2.7/lib/python2.7/subprocess.py", line 1024, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
  
RNA-Seq SNP kissplice • 712 views
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1
Entering edit mode
3.0 years ago

Dear 963786304,

The error probably indicates that KisSplice was not able to locate your input file. It is possible that you were not located in the directory which contained your data when you launched KisSplice. I suggest you change directory and retry, or use the full path to your data file in the command line.

Kind regards.

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