Question: Error in running KisSplice
0
gravatar for 963786304
23 days ago by
9637863040
9637863040 wrote:

Dear All, I'm running KisSplice-2.4.0-p1, but in the first process " Building de Bruijn graph" I get the following error:

kissplice -s 1 -k 41 --experimental -r ./sample_example/reads1.fa -r ./sample_example/reads2.fa
[08:58:55 29/09/2018] --> Building de Bruijn graph...
Graph will be written in results/graph_reads1_reads2_k75.[edges/nodes]
Exception in thread Thread-1:   
Traceback (most recent call last):
File "/home/ysq/wpq/python2.7/lib/python2.7/threading.py", line 801, in __bootstrap_inner
self.run()
..
File "/home/ysq/wpq/python2.7/lib/python2.7/subprocess.py", line 1024, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
  
kissplice snp rna-seq • 107 views
ADD COMMENTlink modified 12 days ago by leandro.ishi.lima80 • written 23 days ago by 9637863040
0
gravatar for leandro.ishi.lima
12 days ago by
leandro.ishi.lima80 wrote:

Dear 963786304,

The error probably indicates that KisSplice was not able to locate your input file. It is possible that you were not located in the directory which contained your data when you launched KisSplice. I suggest you change directory and retry, or use the full path to your data file in the command line.

Kind regards.

ADD COMMENTlink modified 12 days ago • written 12 days ago by leandro.ishi.lima80
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