DE Gene List to Regulatory Network
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5.7 years ago
gtasource ▴ 60

Hi all,

Just finished a DE gene pipeline, and now I have a list of candidate genes. I'm looking to construct some regulatory networks. Any tutorials, or information on how to begin would be great!

DE gene regulatory network edgeR R • 1.1k views
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I have used minet and aracne (cytoscape plugin). You can read the revised ARACNE-AP paper for java script module

https://www.ncbi.nlm.nih.gov/pubmed/27153652

You can also use WGCNA approach. https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/

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