Question: DE Gene List to Regulatory Network
0
gravatar for gtasource
18 months ago by
gtasource30
gtasource30 wrote:

Hi all,

Just finished a DE gene pipeline, and now I have a list of candidate genes. I'm looking to construct some regulatory networks. Any tutorials, or information on how to begin would be great!

ADD COMMENTlink written 18 months ago by gtasource30

I have used minet and aracne (cytoscape plugin). You can read the revised ARACNE-AP paper for java script module

https://www.ncbi.nlm.nih.gov/pubmed/27153652

You can also use WGCNA approach. https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/

ADD REPLYlink written 18 months ago by piyushjo300
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1881 users visited in the last hour