Off topic:Can I get the SNPs from my RNA-Seq fastq files?
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5.5 years ago
Pin.Bioinf ▴ 340

Hello,

I was asked if I can know/obtain the SNPs in the samples we sequenced with RNA-Seq. Can I do it from the .fastq files? How can I do it? Also, these fastq files mapped agains reference with 50M reads, would that be enough? Do I need to compute coverage?

Thank you

RNA SNP fastq RNA-Seq • 744 views
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