Question: Beagle 4.1 - phasing and IBD using multiple chromosomes
gravatar for mstagliamonte
11 months ago by
mstagliamonte0 wrote:

Hi, BioStars users,

I am trying to use Beagle 4.1 for phasing and IBD analysis on a non-model organism. I am trying to understand how to do it for multiple chromosomes. Should I perform a different iteration for each chromosome, or combine the data in one vcf + one map file?

snp genome • 631 views
ADD COMMENTlink modified 9 months ago by Biostar ♦♦ 20 • written 11 months ago by mstagliamonte0

I did similar tasks one chromosome at a time based on the assumption that genetic materials on different chromosomes are completely independent with each, i. e. no linkage.

ADD REPLYlink written 11 months ago by Vitis2.2k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 711 users visited in the last hour