SNP coordinates for all genome builds
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6.0 years ago
muraved ▴ 10

I have a .map file which locates rs11171092 at 12:40654350. However, this does not match any of the usual builds:

hg18 12 53493738

hg19 12 55207471

hg38 12 54813687

Is there any way to look up ALL available information for a given RSID? This seems like a standard thing, but I cannot figure this out somehow.

SNP GWAS • 871 views
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Entering edit mode
6.0 years ago
Brice Sarver ★ 3.8k

Have you tried downloading the dbSNP VCF from the NCBI FTP, then correlating that with your rsIDs?

Edit: I'm seeing GRCh37p13 and GRCh38p7 with a quick browse; 36 may be available in the archive.

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