Entering edit mode
5.5 years ago
Duckula
▴
50
Hi everyone, I would like to convert my seurat object to an anndata format and for that I am using the following code
Convert(from = Geissmann_Seurat,
to = "anndata",
filename = "Seurat_object_for_python.h5ad",
chunk.dims = "auto",
overwrite = F,
display.progress = T)
But I receive the following error:
Error in py_call_impl(callable, dots$args, dots$keywords) :
ValueError: Variables annot.
var
must have number of columns ofX
(23169), but has 0 rows.
Is something wrong in my seurat object or does anyone has an idea what can be the source of the problem?
Thanks alot