Hi,
A couple of months ago, Laura mentioned that they did not have yet the population level allele frequencies for the latest 1000 genomes data release, i.e., the 20101123 release.
http://biostar.stackexchange.com/questions/9550/why-so-many-missing-genotypes-in-1000-genomes-data
I checked the directory (ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20101123) to see if they already published the AF information, however, it does not seem they did.
AF info only exists separately for the calls from each institute.
Does anyone know if they publish population level AF information somewhere else?
Thanks
This not available right now, so far as I know.
nope we still only have global allele frequencies, You can use the genotype files to get AC/AN based estimates but these may be inaccurate