Entering edit mode
5.5 years ago
lkw222
▴
30
Looking for some recommendations. A former coworker left me with a table resulting from, I believe, the summarize taxa workflow in qiime.
The table I have has the following columns - sample ID, time ID, treatment ID, number with no blast hits, k__Archaea;p__Crenarchaeota, k__Archaea;p__Euryarchaeota, k__Archaea;p__[Parvarchaeota], k__Bacteria;p__, k__Bacteria;p__AC1, k__Bacteria;p__AD3, ...., etc.
I'm a geneticist but not familiar with metagenomic data. This table is the only data I was left. Can I use it and a script in qiime to plot the results and find significant differences?
