ctsGE: Matrix Error
Entering edit mode
2.6 years ago
anokhi1997 • 0

Hello! So I have been working on RNA- seq data from different developmental time periods and I learnt about ctsGE being a good way to look at this data. While trying to work on it, however, I keep getting the same error while inputting the matrix no matter how I change my data or my code.

data_dir <- ("/MY/DIRECTORY/")

files <- dir(path=data_dir, pattern = "\.csv")

rts <- readTSGE(files, path = data_dir, labels = c("Day6","Day8","Day9") )

Error: Error in [.data.frame(d[[i]], , columns[2]) : undefined columns selected

The files themselves have two columns: GeneIDs and Day6/8/9. Any help would be great! :)

Thank you!

ctsGE Rstudio RNA-Seq • 515 views

Login before adding your answer.

Traffic: 1792 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6