ctsGE: Matrix Error
0
0
Entering edit mode
2.6 years ago
anokhi1997 • 0

Hello! So I have been working on RNA- seq data from different developmental time periods and I learnt about ctsGE being a good way to look at this data. While trying to work on it, however, I keep getting the same error while inputting the matrix no matter how I change my data or my code.

data_dir <- ("/MY/DIRECTORY/")

files <- dir(path=data_dir, pattern = "\.csv")

rts <- readTSGE(files, path = data_dir, labels = c("Day6","Day8","Day9") )

Error: Error in [.data.frame(d[[i]], , columns[2]) : undefined columns selected

The files themselves have two columns: GeneIDs and Day6/8/9. Any help would be great! :)

Thank you!

ctsGE Rstudio RNA-Seq • 515 views
ADD COMMENT

Login before adding your answer.

Traffic: 1792 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6