Question: ATAC-seq transcription factor binding prediction
gravatar for Lucy
3 months ago by
Lucy0 wrote:


I am trying to predict transcription factor binding sites from ATAC-seq data, for which I also have matched RNA-seq. I have read a lot of papers recently suggesting different methods for doing this (all of which claim that they are better than the other techniques). I was wondering whether anyone had experience with these different methods, and whether they would recommend any?

I am very confused by all of the available options so would appreciate some guidance!



ADD COMMENTlink modified 7 days ago by am26220 • written 3 months ago by Lucy0

Hi Lucy I am going through the same process, have you found a good software to start with?



ADD REPLYlink written 7 days ago by am26220

Why ATAC-seq not ChIP-seq?

ADD REPLYlink written 7 days ago by Shicheng Guo7.4k
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