Question: --min-count of popoolation2 (the minimum count of the minor allele)
gravatar for AGE
22 months ago by
AGE20 wrote:

Can someone explain how the --min-count for the minor allele works in popoolation2?

The default is 2 but I am not sure what that translates to when it comes to frequency and it also seems low. If I have two pools of 50 individuals each, does that mean that --min-count 5 would translate to MAF of 0.05?

Any clarification is appreciated!

snp next-gen popoolation2 • 511 views
ADD COMMENTlink written 22 months ago by AGE20
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