miRNA set input, gene target ranked output
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5.4 years ago
mpallocc ▴ 10

Dear all,

I'm looking for a tool (actually an API, but let's start from any tool)

that given a miRNA list m1...mN

returns a list of ranked genes G1... GM where G1 is the gene most likely to be target of the miRNA set.

Of course, not all miRNA will be targeting each gene, but I am interested in the summarization itself more than the granular result.

I found several nice tools in order to perform miRNA set analysis, e.g. TAM 2, but they are mostly focused on ontologies and functional annotations.

miRNA set analysis miRNA targets • 866 views
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After some digging, http://www.proto.cs.huji.ac.il/mirror/search.php miRror table gives such a table as output.

ComiR also, but it seems to not even work on the example data: http://www.benoslab.pitt.edu/comir/index2.php

But unfortunately I cannot see a linked API, or event the local source package to download.

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