I have a CWL script which says it is
Final process status is success, but none of the output files are written to the described output directory. The CWL scripts has two input parameter one is input directory where all input file for the
HIF_scorefinder.R is defined and second is a designated directory, where all output files are suppose to be written into.
But currently, my script just runs and finishes with final status
Final process status is success, but inside the output directory there is no expected files. Here is what I have the
The YML file is,
sample_input: class: Directory path: /cluster/home/user/Projects/Kjo_proct/pocKj outputdir: HypScore1
And I run the cwltool with env preservation.
cwltool --debug --preserve-entire-environment hypoxia.cwl moun.yml. I am using
CWL tool version
cwltool v1.0 201810
The problem is I need a bunch of files to be written to my final output directory. But it leaves an empty directory. I am not able to figure what is wrong here.
Any help would be much appreciated!