I'd like to run the --score flag across chromosomes. I tried this syntax:
# PBS -t 1-22
--score snps_file header list-variants
This generated only one set of output files (.sscore, sscore.vars, and .log), ostensibly from chr22. I've been able to iterate this way using --clump and I wonder if I can produce either of the following: 1. Separate --score reports per chromosome or 2. One final combined report for chr's 1-22? Thanks.