Question: Predicting targets from 3-UTR of novel splice variants
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gravatar for sayantanibhowmik15
2.1 years ago by
sayantanibhowmik150 wrote:

Hello Everyone,

I am trying to predict microRNAs that could target the 3ÚTR of a novel variant of SCARB1. It's better for me if I get a software where I can put the 3ÚTR sequence and it gives me a list of microRNAs that could target. Please help.

splice variant microrna 3utr • 413 views
ADD COMMENTlink modified 2.1 years ago by Erin_Ensembl410 • written 2.1 years ago by sayantanibhowmik150
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gravatar for Erin_Ensembl
2.1 years ago by
Erin_Ensembl410
EMBL-EBI
Erin_Ensembl410 wrote:

Tarbase is a database of predicted mRNA target positions. You can find your gene in Ensembl and add the Tarbase track (click on Configure this page > Regulation > Other Regulatory regions > Tarbase > close window) in the location page, zoom into the 3' UTR and see where they are predicted to bind - for example. You can click on the green boxes representing the miRNA binding to see info and links to mirBase. I don't think you'll be able to download the data from Ensembl though, you may need to do that from tar base.

ADD COMMENTlink written 2.1 years ago by Erin_Ensembl410
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