Entering edit mode
5.2 years ago
Chironex
▴
40
I have this GRange list. I would to make some manipulation:
GRanges object with 1498791 ranges and 0 metadata columns:
seqnames
<Rle>
[1] KQ415657.1 isolate UCB-OBI-ISO-001 unplaced genomic scaffold Scaffold5, whole genome shotgun sequence
[2] KQ415657.1 isolate UCB-OBI-ISO-001 unplaced genomic scaffold Scaffold5, whole genome shotgun sequence
[3] KQ415657.1 isolate UCB-OBI-ISO-001 unplaced genomic scaffold Scaffold5, whole genome shotgun sequence
ranges strand
<IRanges> <Rle>
[1] 303-309 *
[2] 1741-1747 *
[3] 1972-1978 *
I would rename the strings, and also create columns with start and and, and also define the strand. I would have a result like this but I don't know how to change the names of seqnames
GRanges object with 1498791 ranges and 0 metadata columns:
seqnames ranges strand
start end
[1] KQ415657.1 303 309 +
[2] KQ415657.1 1741 1747 +
[3] KQ415657.1 1972 1978 +
could you help me?