How to use monocle to import a loom file?
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2.3 years ago
yuhongruoyi ▴ 10

I want to merge my seurat data of 3 experimental time points with the Hippocampus data provided by loom edition. .But I don't know how to convert this loom file to expression matrix or other CDS that monocle can recognize. I know monocle can import seurat object, but the seurat tutorial says that : Seurat offers a conversion function to go from Seurat objects to loom files. The reverse conversion is currently in progress.it means that I could't convert loom file to seurat. So what should I do to import loom file to monocle? Can you give me some advice?Thank you very much! loom file

RNA-Seq R r monocle seurat • 1.2k views
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