How to use monocle to import a loom file?
Entering edit mode
2.3 years ago
yuhongruoyi ▴ 10

I want to merge my seurat data of 3 experimental time points with the Hippocampus data provided by loom edition. .But I don't know how to convert this loom file to expression matrix or other CDS that monocle can recognize. I know monocle can import seurat object, but the seurat tutorial says that : Seurat offers a conversion function to go from Seurat objects to loom files. The reverse conversion is currently in means that I could't convert loom file to seurat. So what should I do to import loom file to monocle? Can you give me some advice?Thank you very much! loom file

RNA-Seq R r monocle seurat • 1.2k views

Login before adding your answer.

Traffic: 1817 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6