How to skip vep-annotating step for vcf2maf
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3.2 years ago
Laven9 • 0

I have got my variant.vcf annotated at the web of VEP and downloaded the annotated variant.annotated.vcf file.

My problem is : now I want to convert my variant.annotated.vcf to maf format. I used vcf2maf but it cannot skip the vep-annotating step even that I have a copy of variant.annotated.vcf names variant.annotated.vep.vcf in my data dir.

Is there any other apps I can use to convert my annotated vcf file to maf? Or what else can I do to skip the vep-annotating step of vcf2maf

Vcf2maf • 906 views
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Hi @Laven9, Did you manage to solve it?