I have got my
variant.vcf annotated at the web of
VEP and downloaded the annotated
My problem is : now I want to convert my
maf format. I used
vcf2maf but it cannot skip the vep-annotating step even that I have a copy of
variant.annotated.vep.vcf in my data dir.
Is there any other apps I can use to convert my annotated vcf file to maf? Or what else can I do to skip the vep-annotating step of