Question: How to skip vep-annotating step for vcf2maf
gravatar for Laven9
22 months ago by
Laven90 wrote:

I have got my variant.vcf annotated at the web of VEP and downloaded the annotated variant.annotated.vcf file.

My problem is : now I want to convert my variant.annotated.vcf to maf format. I used vcf2maf but it cannot skip the vep-annotating step even that I have a copy of variant.annotated.vcf names variant.annotated.vep.vcf in my data dir.

Is there any other apps I can use to convert my annotated vcf file to maf? Or what else can I do to skip the vep-annotating step of vcf2maf

vcf2maf • 482 views
ADD COMMENTlink modified 22 months ago • written 22 months ago by Laven90

Hi @Laven9, Did you manage to solve it?

ADD REPLYlink written 15 months ago by dodausp140
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