Question: Difference between HC and UG methods
gravatar for chengye
14 months ago by
chengye10 wrote:

When I compared the result of HaplotypeCaller and Unifiedgenotyper, I found some locus that only be calling variation by UG. However, the origin bam file and bamout file produced by reassembly both contain this variation(see the figure 1). The number of reads supporting reference and alter allele are 456(87%) and 69(13%) respectively in raw bam. Meanwhile they are 439(86%) and 69(14%) in bamout file. I have got confused with this problem. enter image description here

ADD COMMENTlink modified 13 months ago by Biostar ♦♦ 20 • written 14 months ago by chengye10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1282 users visited in the last hour