Question: patients hg19 VEP Fasta and CACHE GRCh37
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gravatar for cocchi.e89
12 weeks ago by
cocchi.e8930
cocchi.e8930 wrote:

Dear all, sorry in advance if it sounds silly but I want to be sure.

I am new to VEP, I have patients VCF files annotated with hg19 reference, shall I use VEP GRCh37 cache (homo_sapiens_vep_96_GRCh37.tar.gz) and fasta (Homo_sapiens.GRCh37.dna.toplevel.fa.gz), this is not an internal VEP "old version" that does not matter with my patients align right?

Thanks in advance for any suggestion!

hg19 vep grch37 ensembl • 197 views
ADD COMMENTlink modified 5 weeks ago by Biostar ♦♦ 20 • written 12 weeks ago by cocchi.e8930
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