load csv/txt... format dataset to minfi package class object
Entering edit mode
23 months ago
amanzju • 0

Dear All,

Recently, I am analyzing dna methylation data using the minfi package. I have seen minfi package is good for analyze dna methylation data using raw idat files. But in most of the cases from GEO database, I am getting only a series matrix or soft format family matrix without sentrix position and sentrix ID rather than raw idat files. In this case my questions are:

  1. is it possible to handle a simple data matrix/data frame with csv/txt format to get the facility to use all function from minfi package?
  2. if it's possible, then how?

I would be so grateful to you if kindly give me proper advise with example.

Advance thanks.

genome R • 641 views

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