Question: aligned.sorted.bam.edgeCount output in rMATS
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22 months ago by
sneha108.ss0 wrote:


I am using rMATS to find differential splicing events. I was able to run it successfully but I'm having trouble understanding one particular output file. Could someone please let me know what the columns in the aligned.sorted.bam.edgeCount file refers to? Are the values in the second column the number of reads that support the splice junction?

Thank you, Sneha

rna-seq • 365 views
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