Question: HiSAT2 edit distance option
gravatar for gokberk
10 months ago by
gokberk60 wrote:

Hi all,

I'm analyzing single-end RNA-seq data and was wondering if there is a way to set the edit distance while using HiSAT2. It is not mentioned in the manual, should I somehow arrange the --score-min function?

I was also wondering if there is an option like TopHat's --microexon-search to look for reads that map to microexons.

Cheers, Gökberk

hisat2 rna-seq • 231 views
ADD COMMENTlink modified 6 weeks ago by ynau_kanghuadu0 • written 10 months ago by gokberk60
gravatar for ynau_kanghuadu
6 weeks ago by
ynau_kanghuadu0 wrote:

Hi !

Did you set the 'edit distance' option ? I can't set this option, So, if you can help me, I will very happy.

Thank you. kanghua

ADD COMMENTlink written 6 weeks ago by ynau_kanghuadu0
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