Question: What tool can compute SNPs from a set of assemblies and output the SNPs into a dataframe?
0
gravatar for O.rka
6 days ago by
O.rka110
O.rka110 wrote:

I have several assemblies all from the same bacterial strain. I want to do a SNPs analysis but I'm having trouble finding tools that will do this and output the data into a dataframe of SNPs by position.

I have the fasta files for each assembly along with the shotgun genomic reads that went into (some of) them.

assembly • 52 views
ADD COMMENTlink written 6 days ago by O.rka110
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1843 users visited in the last hour