Question: What tool can compute SNPs from a set of assemblies and output the SNPs into a dataframe?
gravatar for O.rka
11 months ago by
O.rka170 wrote:

I have several assemblies all from the same bacterial strain. I want to do a SNPs analysis but I'm having trouble finding tools that will do this and output the data into a dataframe of SNPs by position.

I have the fasta files for each assembly along with the shotgun genomic reads that went into (some of) them.

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ADD COMMENTlink written 11 months ago by O.rka170
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