Converting Genotype Data to Structure Input Format
Entering edit mode
22 months ago
thomm80 • 0

Hi, I have a text file with SNP data that I'd like to convert to an input file for Structure. Currently, my rows consist of individuals, and each column is a called diploid genotype at a particular locus:

   V1   TT  GG  GG  GG  GG  TT  CC  CC

Above, V1 is individual one with the first 8 loci in the dataset. To convert to a structure format, I'd like to duplicate each row, with the first row for each individual containing the first allele, and the second row containing the second allele (I'll then change the base calls to a numeric format, but I don't need assistance with that). I'd like to do this in Text Wrangler, if possible. Can anyone help me with this? Thanks!

SNP next-gen • 565 views

Login before adding your answer.

Traffic: 2069 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6