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• Refseq(+/-) and dbSNP (forward/reverse)strand
  Hello, I am looking for a list of all SNPs for GRCh 37 assembly in the human genome aligned t...
• How to download VCF of 1000 genome project with population frequencies?
  Hi folks, I would like to grab the population frequencies for a list of SNPs from 1000 genome pr...
• Compare allele frequencies between populations
  Hi, I want to compare the Minor allele frequencies for a list of SNPs from my population with tha...
• Is there any tool to extract LD SNPs based on any other databases (except 1K database)?
  Hello friends, I am trying to extract LD SNPs for 10 rsids in CEU population. I tried using Hapl...
• Proxy SNPs from 1000 genome phase3
  I have a list of about 250 SNPs. I want to obtain the proxy SNPs for them using the 1000 genomes....
• Identifying Snps Contributed By 1000Genomes Project
  Hello, I was wondering if anyone might know how to determine and retrieve a list of SNPs that ha...
• Extract Allele Frequency Of Ceu Samples Only Form Latest 1000 Genomes Data For A Set Of Snps
  I want to get allele frequencies of a list of SNPs from 1000 genomes release 20110521 for CEU pop...
• Rare Variant Snps With No Allele Frequency
  Hello, I am working on analysis of human genomes to detect rare variants . One of the filterin...
• 1000 Genomes Ld Latest Version From Snp To Ld Snps
  Hello everyone, For my analysis I am looking for a tool/method that makes from a list of selecte...
• dbSNP: minor alleles for a list of SNPs
  I'm looking for minor alleles generated from current 1000 genome project given a list of SNPs. Fo...
• 1000 Genome genotypes for list of snps
  I'm trying to download the genotypes from 1000 Genomes for a list of about 3,500 snps for all ind...
• Missing Snps For Hba1-Hba2 In 1000 Genome Data??
  Hey guys, I wanted to extract the SNPs called for HBA1 and HBA2 genes in 1000 genome project. Ho...
• Retrieval of Snps data from 1000 genome browser?
  If we have a list of genes and we want to retrieve its Snps at a time from 1000 Genome browser th...
• Best Approach To Select Aims Panel
  Hi, I would like to use 1000 genomes vcf data to select Ancestry Informative Markers (AIMs) f...
• Counting Snps From 1000 Genome Data
  I am looking at the 1000 Genome data found here: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pil...
• Where to download official reference and alternative alleles from 1000 Genomes?
  Hello, using Plink 1.9, I merged to cohorts of individuals that were genotyped at the same ~17000...
• How can I download from the 1000 genome information for a list of SNPs in specific populations?
  Hi All, I have a list of rs codes and positions from a Microarray and I need to get the same pos...
• [SOLVED] Get LD data for any two SNPs
  Is there a good way to take any two SNPs and pull out the LD between them, particularly the R-squ...
• Cis- eQTL Question
  I'm trying to do a cis eqtl analysis, so I have a linear regression where gene expression is the ...
• Annotate noncoding regions for 1000 genome data
  Is there any tool or database to annotate the SNPs in the noncoding regions? I am working on 1000...
• How to check if my SNPs are also present in 1000 genome project
  Hi!   I have a list of SNPs, how can I know which one of them are also present in 1000 genome p...
• Haplotype Frequency Calculator For Vcf Files
  Aim: Download public data in a range, calculate the haplotype frequency for SNPs in the region fo...
• Mapping Illumina Snp Ids To Proper Rs Ids
  I am currently working with Illumina's Omni snp chips. When I initially got the raw data, Illumin...
• Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
  Hello, I have a list of SNPs (in the form of a VCF) found in our [very] targeted sequencing data...