Question: BAF and VARW
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gravatar for rhino_rus
20 months ago by
rhino_rus0
Russia, Yaroslavl'
rhino_rus0 wrote:

Dear Biostars community,
I'm working with Ion Torrent data and I'm aiming to filter indels in result .vcf files.
So, I've read these articles:
- https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0045798
- https://www.ncbi.nlm.nih.gov/pubmed/24962530
and in these articles are used parameters B-AlleleFrequency (BAF) and VARiation of the Width of gaps and inserts (VARW) per indel position.
But there is no explanation on how to get these parameters. Could you please help me?

snp next-gen baf indels varw • 331 views
ADD COMMENTlink modified 20 months ago • written 20 months ago by rhino_rus0
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