Similar posts • Search »

• Genotyped SNPs were lost after michigan imputation server imputation and phasing
  Hi All, I run a imputation and phasing with 'michigan imputation server' for exom-beadchip arra...
• Quality control after genotype imputation
  Can anyone kindly explain me the possible ways of quality control of imputed data? Any reference ...
• Convert IMPUTE2 to VCF while keeping phase information
  Hi,   I have imputed genotypes using the IMPUTE2 software. Now I need to convert my IMPUTE2 form...
• Negative values for imputed genotypes on X chromsomes in females
  Hi there, I imputed a set of around ~10k individuals using the sanger imputation server (1000 Ge...
• Why does genotype data change after genetic imputation?
  Hello, I am trying to perform genetic imputation on TCGA genotype data so I can perform a GWAS-t...
• General Imputation Softwares To Impute Missing Genotypes In Candidate Gene Studies
  I know that we can impute missing genotypes in GWAS studies by inferring from the Hapmap or 1000-...
• Genotype Imputation
  Hi, Is there any tutorial for genotype imputation? Suppose the poputation is chb+jpt. I am newb...
• Merging SNPs from multiple imputation runs
  Hi, I have imputed genotypes surrounding a number of genes using IMPUTE2. Some of these genomic ...
• Preference about IMPUTATION TOOL
  "Which Imputation tool is broadly used?" "Which Imputation method do you use? and why?" In thes...
• genotype imputation pipeline
  Hello. I'm trying hard to go through the genotype imputation pipeline, unsuccessfully though. I...
• How to get imputation accuracy/quality after using IMPUTE2?
  I know I might be missing something obvious, but how do I get the accuracy/quality of my imputati...
• Imputation for genotyping data
  The imputation method used to impute genotype is usually used for GWAS data. Can this be used for...
• Phased And Imputed Genotypes For Hapmap Samples With Plink Format
  Hi all, I am looking for the phased and imputed genotypes for hapmap samples with plink format. ...
• Dealing with missing values: By looking at Density distribution curves can I decide best data imputation method for missing omics data?
  By looking at Density distribution curves can I decide best imputation method for omics data? ...
• Does it make sense to perform Genotype Imputation using variants called from WES?
  Hi Biostars: I have genotype data called from Whole Exon Sequencing, which contains 0.12 million...
• Genotype imputation using BEAGLE 3.3.2
  Hi I have a few questions regarding genotype imputation using Beagle. I am very new in the bionin...
• convert imputed genotypes in VCF file to plink format
  Hello, I have imputed data (genotype dosages) in a VCF file and would like to force hard genotyp...
• Genotype imputation or tagging?
  Hi, I want to evaluate 41 snps in my dataset. However only 19 were genotyped by the plataform (i...
• Are there needs to perform imputation for genotype generated from WGS ?
  I know imputation is usually performed for genotypes from chips. What if these genotypes are from...