Mutmap plus Pipeline errors
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2.5 years ago

Hello all,

My name is krishna. I'm using Mutmap plus and QTL seq framework for my QTL seq (Quantitative trait locus). I'm posting this question because there is no site with info regarding the errors in the above mentioned frameworks. I request you all to please help me where can i find a solution. I'm not listing the errors just because there are lot many. If these frameworks are reliable to proceed with QTLseq ? If not please suggest me the best pipelines for QTL analysis.

Description of the data i have:

Total samples=8 (~7+7G .gz PE files)

MAPPING FOR TOMATO GBNV

T1 - IIHR-2901 - RESISTANT PARENT

T2 - IIHR-2265 - SUSCEPTIBLE PARENT

T3 - RESISTANT BULK - F2 OF IIHR-2265 X IIHR-2901

T4 - SUSCEPTIBLE BULK - F2 OF IIHR-2265 X IIHR-2901

MAPPING FOR TOMATO EARLY BLIGHT

E1 - IIHR-2620 - SUSCEPTIBLE PARENT

E2 - IIHR-2891 - RESISTANT PARENT

E3 - SUSCEPTIBLE BULK - F2 OF IIHR-2620 X IIHR-2891

E4 - RESISTANT BULK - F2 OF IIHR-2620 X IIHR-2891

Config of my server:

No of CPU cores : 24

RAM : 512G

Storage : 5T

OS : Ubuntu 12.0.4 LTS

Please help me with your suggestions,

Thank you very much in advance..

Mutmap mutmap plus QTL Seq QTL Mapping • 731 views
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Dear all,

A new version of QTLseq pipeline is released (Release date: 26/07/2019) which is built on latest tools and hence it is error free. Link: http://genome-e.ibrc.or.jp/home/bioinformatics-team/mutmap

Thanks!!

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