Does anyone know the tool(s) to identify duplicates regions using RNA seq data of mouse?
I have RNA seq data of hybrid mouse cell lines. I expect that one allele has more than double expression in certain cluster/regions. That is it shows complete bias toward expression from one allele. I would like to identify these regions. Since I have aligned bam file of RNA seq data, is there a compatible tool which can detect it?
It will be very helpful if someone has suggestions.