Question: Query empty when performing psiblast
gravatar for kashbaker13
11 months ago by
kashbaker130 wrote:

When I ran standalone PSI-BLAST, it gave me the following message:

Warning:[psiblast] Query is empty!

blast • 226 views
ADD COMMENTlink written 11 months ago by kashbaker130

Warning:[psiblast] Query is empty!

Seems like a pretty clear warning. Either your query is literally empty, or it is in some format not recognized by psiblast. If your file is called query.fas, type:

ls -al query.fas
more query.fas

and check the file size and its contents.

ADD REPLYlink written 11 months ago by Mensur Dlakic5.8k
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