I'm starting from a count matrix called Raw Dreads with each column being an RNA-Seq dataset, and each row being the reads associated with a gene (the names are EnsemblIDs).
I've also created matrix called support with the columns: sample, the name of an RNA-Seq dataset, and condition, which is the dataset they belong to.
I want to use EnrichmentBrowser on this dataset, and so need to turn it into an SummarizedExperiment file. I can't for the life of me work out how. Can anyone give me advice?
That worked, and also worked with adding colData=Support. I think I got confused because the command that's listed didn't work:
Sorry if I missed something, but it didn't seem obvious.