Question: scRNAseq: How to select your reference dataset for cell type identification
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gravatar for Solal
11 months ago by
Solal0
Australia, Brisbane
Solal0 wrote:

HI guys, Sorry that's gonna be a pretty naive question, I am trying to the cell types coming from my sample (Mice Hippocampus) and am kind of lost as to what reference dataset I should use. I've created my tSNE plot using Seurat but I don't know how to proceed to identify my clusters.

Cheers and thanks.

sequencing rna-seq rna • 530 views
ADD COMMENTlink written 11 months ago by Solal0

You might want to check SingleR (https://github.com/dviraran/SingleR) and especially its new dev version here: https://github.com/LTLA/SingleR

ADD REPLYlink written 11 months ago by Haci370
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