ChIP-seq and histone-seq databases
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4.8 years ago
spinella • 0

I am trying to find public datasets for transcription factor ChIP-seq and histone modification ChiP-seq for common cancer cell lines. I know about ENCODE. Are there other databases that or bigger and more comprehensive? Thanks

ChIP-Seq genome • 960 views
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Thanks the both of you

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4.8 years ago

The Roadmap Epigenome project is huge and contains many cell lines. The genome browser for it is also very good.

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4.8 years ago
ATpoint 82k

ReMap is probably as comprehesive as it gets right now http://tagc.univ-mrs.fr/remap/

Welcome to ReMap an integrative analysis of transcriptional regulators ChIP-seq experiments from both Public and Encode datasets. The ReMap atlas consists of 80 million peaks from 485 transcription factors (TFs), transcription coactivators (TCAs) and chromatin-remodeling factors (CRFs). The atlas is available to browse or download either for a given TF or cell line, or for the entire dataset.

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